Prevalence and phylogenetic analysis of porcine diarrhea associated viruses in southern China from 2012 to 2018

Prevalence and phylogenetic analysis of porcine diarrhea associated viruses in southern China from 2012 to 2018

Fanfan Zhang, Suxian Luo, Jun Gu, Zhiquan Li, Kai Li, Weifeng Yuan, Yu Ye, Hao Li, Zhen Ding, Deping Song, Yuxin Tang

Abstract Background In China, large-scale outbreaks of severe diarrhea caused by viruses have occurred in pigs since late 2010. To investigate the prevalence and genetic evolution of diarrhea-associated viruses responsible for the outbreaks, a total of 2987 field diarrheal samples collected from 168 pig farms in five provinces in Southern China during 2012–2018 were tested. Results Porcine epidemic diarrhea virus (PEDV) was most frequently detected virus with prevalence rates between 50.21 and 62.10% in samples, and 96.43% (162/168) in premises, respectively. Porcine deltacoronavirus (PDCoV) was the second prevalent virus with prevalence rates ranging from 19.62 to 29.19% in samples, and 70.24% (118/168) in premises, respectively. Both transmissible gastroenteritis virus (TGEV) and porcine rotavirus (PoRV) were detected at low prevalence rates of

2019

Prevalence, Porcine epidemic diarrhea virus, porcine deltacoronavirus, Porcine diarrhea, Swine acute diarrhea syndrome coronavirus

10.1186/s12917-019-2212-2

Epidemiology and Health

Korean Society of Epidemiology

Veterinary medicine